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    SMOC1 SPARC related modular calcium binding 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100395866, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SMOC1
    Gene description
    SPARC related modular calcium binding 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See SMOC1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (100750013..100908127)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (101400244..101558350)

    Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118145125 Neighboring gene uncharacterized LOC118144973 Neighboring gene solute carrier family 8 member A3 Neighboring gene disintegrin and metalloproteinase domain-containing protein 20-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables extracellular matrix binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SPARC-related modular calcium-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071451.1 Reference mCalJa1.2.pat.X

      Range
      100750013..100908127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035260837.2 → XP_035116728.1  SPARC-related modular calcium-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I3WJ39
      Conserved Domains (4) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd16240
      Location:383 → 497
      EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 287
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

    2. XM_035260841.2 → XP_035116732.1  SPARC-related modular calcium-binding protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8I3WJ39
      Conserved Domains (5) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd00252
      Location:417 → 449
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:372 → 486
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 276
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

    3. XM_035260834.2 → XP_035116725.1  SPARC-related modular calcium-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3W6E2
      Conserved Domains (4) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd16240
      Location:383 → 497
      EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 287
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

    4. XM_035260835.2 → XP_035116726.1  SPARC-related modular calcium-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I4A0B4
      Conserved Domains (4) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd16240
      Location:383 → 497
      EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 287
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

    5. XM_035260836.2 → XP_035116727.1  SPARC-related modular calcium-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I4A0B4
      Conserved Domains (4) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd16240
      Location:383 → 497
      EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 287
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

    6. XM_035260838.2 → XP_035116729.1  SPARC-related modular calcium-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I3W6E2, A0A8I4A4C4
      Conserved Domains (5) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd00252
      Location:417 → 449
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:372 → 486
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 276
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

    7. XM_035260839.2 → XP_035116730.1  SPARC-related modular calcium-binding protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8I4A0B4
      Conserved Domains (4) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd16240
      Location:372 → 486
      EFh_SPARC_SMOC1; EF-hand, extracellular calcium-binding (EC) motif, found in secreted modular calcium-binding protein 1 (SMOC-1)
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 276
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain

    8. XM_035260840.2 → XP_035116731.1  SPARC-related modular calcium-binding protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8I4A0B4
      Conserved Domains (5) summary
      smart00280
      Location:99 → 144
      KAZAL; Kazal type serine protease inhibitors
      cd00252
      Location:417 → 449
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:372 → 486
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
      pfam00086
      Location:152 → 215
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam16597
      Location:216 → 276
      Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain
    Nucleotide Protein
    Heading Accession and Version

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