U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Gm20139 predicted gene, 20139 [ Mus musculus (house mouse) ]

    Gene ID: 100504265, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm20139provided by MGI
    Official Full Name
    predicted gene, 20139provided by MGI
    Primary source
    MGI:MGI:5012324
    See related
    AllianceGenome:MGI:5012324
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm20139 in Genome Data Viewer
    Location:
    10 A3; 10 8.18 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (19017497..19083695)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (19141749..19207947)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700124M09 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:18824464-18824722 Neighboring gene triosephosphate isomerase related sequence 5 Neighboring gene STARR-seq mESC enhancer starr_25925 Neighboring gene STARR-positive B cell enhancer ABC_E3880 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:18906195-18906378 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:18908016-18908222 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:18908369-18908522 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:18915516-18915699 Neighboring gene STARR-seq mESC enhancer starr_25928 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:18952657-18952766 Neighboring gene predicted gene, 40607 Neighboring gene enolase 2, gamma neuronal pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038021.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC158622

    2. NR_038022.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has a different 5' end, compared to variant 1.
      Source sequence(s)
      AC158622

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      19017497..19083695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.