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    PALLD palladin, cytoskeletal associated protein [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100607294, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PALLD
    Gene description
    palladin, cytoskeletal associated protein
    See related
    EnsemblRapid:ENSNLEG00000006567
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
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    Genomic context

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    See PALLD in Genome Data Viewer
    Location:
    chromosome: 7b
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) 7b NC_044387.1 (88866062..89300281)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) 7b NC_019822.1 (92346197..92798154)

    Chromosome 7b - NC_044387.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene DExD/H-box helicase 60 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene DExD/H-box 60 like Neighboring gene transcription factor BTF3 homolog 4 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene carbonyl reductase 4 Neighboring gene SH3 domain containing ring finger 1 Neighboring gene NIMA related kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in dendrite self-avoidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    palladin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044387.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      88866062..89300281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003257950.3 → XP_003257998.1  palladin isoform X3

      UniProtKB/TrEMBL
      A0A2I3HJ91
      Related
      ENSNLEP00000043698.1, ENSNLET00000040068.2
      Conserved Domains (2) summary
      cd05893
      Location:1044 → 1118
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:271 → 361
      I-set; Immunoglobulin I-set domain

    2. XM_003257949.3 → XP_003257997.1  palladin isoform X4

      UniProtKB/TrEMBL
      A0A2I3HQ55
      Related
      ENSNLEP00000045677.1, ENSNLET00000034850.2
      Conserved Domains (2) summary
      cd05893
      Location:1027 → 1101
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:271 → 361
      I-set; Immunoglobulin I-set domain

    3. XM_030816308.1 → XP_030672168.1  palladin isoform X1

    4. XM_030816309.1 → XP_030672169.1  palladin isoform X2

      Conserved Domains (2) summary
      cd05893
      Location:1251 → 1325
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:271 → 361
      I-set; Immunoglobulin I-set domain

    5. XM_003257948.4 → XP_003257996.1  palladin isoform X5

      Conserved Domains (2) summary
      cd05893
      Location:645 → 719
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:529 → 619
      I-set; Immunoglobulin I-set domain

    6. XM_030816310.1 → XP_030672170.1  palladin isoform X6

      Conserved Domains (2) summary
      cd05893
      Location:557 → 631
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:441 → 531
      I-set; Immunoglobulin I-set domain

    7. XM_030816311.1 → XP_030672171.1  palladin isoform X7

      UniProtKB/TrEMBL
      G1R493
      Related
      ENSNLEP00000008015.2, ENSNLET00000008400.3
      Conserved Domains (2) summary
      cd05893
      Location:540 → 614
      Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
      pfam07679
      Location:424 → 514
      I-set; Immunoglobulin I-set domain
    Nucleotide Protein
    Heading Accession and Version

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