LDLRAD2 low density lipoprotein receptor class A domain containing 2 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: LDLRAD2provided by VGNC
Official Full Name: low density lipoprotein receptor class A domain containing 2provided by VGNC
Primary source: VGNC:VGNC:110404
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in subcutaneous adipose (RPKM 37.5), heart (RPKM 19.7) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	6	NC_010448.4 (79837734..79850311)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	6	NC_010448.3 (73858705..73882022, complement)

Chromosome 6 - NC_010448.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: low density lipoprotein receptor class A domain containing 2; low-density lipoprotein receptor class A domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001435393.1 → NP_001422322.1 low density lipoprotein receptor class A domain containing 2 precursor

Status: VALIDATED

Source sequence(s)

AEMK02000045

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010448.4 Reference Sscrofa11.1 Primary Assembly

Range

79837734..79850311

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021095497.1 → XP_020951156.1 low-density lipoprotein receptor class A domain-containing protein 2

Conserved Domains (2) summary

smart00192
Location:270 → 298

LDLa; Low-density lipoprotein receptor domain class A

cl00049
Location:153 → 246

CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.