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    CALCOCO1 calcium binding and coiled-coil domain 1 [ Loxodonta africana (African savanna elephant) ]

    Gene ID: 100673148, updated on 11-Apr-2024

    Summary

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    Gene symbol
    CALCOCO1
    Gene description
    calcium binding and coiled-coil domain 1
    See related
    EnsemblRapid:ENSLAFG00000015535
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Loxodonta africana
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
    Orthologs
    human mouse all
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    Genomic context

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    See CALCOCO1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 4 NC_087345.1 (88220354..88238629)
    102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573422.1 (40100968..40119270, complement)

    Chromosome 4 - NC_087345.1Genomic Context describing neighboring genes Neighboring gene homeobox C12 Neighboring gene homeobox C13 Neighboring gene ATP synthase membrane subunit c locus 2 Neighboring gene cyclic AMP-dependent transcription factor ATF-7 Neighboring gene uncharacterized LOC135231200

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding and coiled-coil domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mLoxAfr1.hap2

    Genomic

    1. NC_087345.1 Reference mLoxAfr1.hap2

      Range
      88220354..88238629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003405056.4 → XP_003405104.2  calcium-binding and coiled-coil domain-containing protein 1 isoform X1

      Related
      ENSLAFP00000013021.3, ENSLAFT00000015536.3

    2. XM_010597186.3 → XP_010595488.2  calcium-binding and coiled-coil domain-containing protein 1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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