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    BRICD5 BRICHOS domain containing 5 [ Sus scrofa (pig) ]

    Gene ID: 100738953, updated on 22-Dec-2024

    Summary

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    Official Symbol
    BRICD5provided by VGNC
    Official Full Name
    BRICHOS domain containing 5provided by VGNC
    Primary source
    VGNC:VGNC:85880
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in heart (RPKM 1.9), ovary (RPKM 1.7) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See BRICD5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (39780707..39782478)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (42398543..42400868, complement)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene enoyl-CoA delta isomerase 1 Neighboring gene deoxyribonuclease 1 like 2 Neighboring gene E4F transcription factor 1 Neighboring gene MTOR associated protein, LST8 homolog Neighboring gene phosphoglycolate phosphatase Neighboring gene CASK interacting protein 1 Neighboring gene TNF receptor associated factor 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BRICHOS domain containing 5; BRICHOS domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001435414.1 → NP_001422343.1  BRICHOS domain containing 5

      Status: VALIDATED

      Source sequence(s)
      AEMK02000018

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      39780707..39782478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013987833.2 → XP_013843287.1  BRICHOS domain-containing protein 5 isoform X1

      Conserved Domains (1) summary
      pfam04089
      Location:178 → 232
      BRICHOS; BRICHOS domain

    2. XM_013987834.2 → XP_013843288.1  BRICHOS domain-containing protein 5 isoform X2

      Conserved Domains (1) summary
      smart01039
      Location:175 → 268
      BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer

    3. XM_003481107.4 → XP_003481155.2  BRICHOS domain-containing protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A4X1VPN4, A0A8D0WS06
      Conserved Domains (1) summary
      smart01039
      Location:175 → 268
      BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer
    Nucleotide Protein
    Heading Accession and Version

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