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    LOC100775919 magnesium-chelatase subunit ChlD, chloroplastic [ Glycine max (soybean) ]

    Gene ID: 100775919, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100775919
    Gene description
    magnesium-chelatase subunit ChlD, chloroplastic
    Locus tag
    GLYMA_01G226700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    ChlD2
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    Genomic context

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    See LOC100775919 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (56605577..56615286)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (55505528..55515223)

    Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene cytochrome P450 97B2, chloroplastic-like Neighboring gene scarecrow-like protein 3 Neighboring gene THUMP domain-containing protein 1 homolog Neighboring gene hexokinase-3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular Characterization of Magnesium Chelatase in Soybean [Glycine max (L.) Merr.]. Zhang D, et al. Front Plant Sci, 2018. PMID 29971071, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium chelatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    magnesium-chelatase subunit ChlD, chloroplastic
    Names
    chloroplast magnesium chelatase D subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      56605577..56615286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003517468.5 → XP_003517516.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X1

      See identical proteins and their annotated locations for XP_003517516.1

      UniProtKB/TrEMBL
      K7K5C0
      Conserved Domains (1) summary
      TIGR02031
      Location:86 → 737
      BchD-ChlD; magnesium chelatase ATPase subunit D

    2. XM_006573753.4 → XP_006573816.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X3

      Conserved Domains (3) summary
      TIGR02030
      Location:77 → 391
      BchI-ChlI; magnesium chelatase ATPase subunit I
      cl00057
      Location:546 → 585
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cl21455
      Location:79 → 261
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_041017379.1 → XP_040873313.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X4

      Conserved Domains (1) summary
      TIGR02031
      Location:1 → 454
      BchD-ChlD; magnesium chelatase ATPase subunit D

    4. XM_006573752.4 → XP_006573815.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0R0LNH6
      Conserved Domains (1) summary
      TIGR02031
      Location:35 → 602
      BchD-ChlD; magnesium chelatase ATPase subunit D
    Nucleotide Protein
    Heading Accession and Version

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