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    LOC100826932 protein argonaute 1B [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100826932, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100826932
    Gene description
    protein argonaute 1B
    Locus tag
    BRADI_5g18540v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100826932 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 5 NC_016135.3 (21720460..21739189, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 5 NC_016135.2 (21666829..21685458, complement)

    Chromosome 5 - NC_016135.3Genomic Context describing neighboring genes Neighboring gene protein CHROMATIN REMODELING 19 Neighboring gene protein indeterminate-domain 5, chloroplastic Neighboring gene uncharacterized LOC104585402 Neighboring gene aspartic proteinase-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein argonaute 1B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016135.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      21720460..21739189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010241969.3 → XP_010240271.1  protein argonaute 1B isoform X1

      Conserved Domains (6) summary
      PLN03202
      Location:229 → 1110
      PLN03202; protein argonaute; Provisional
      cd02846
      Location:449 → 563
      PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
      cd04657
      Location:608 → 1060
      Piwi_ago-like; Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of ...
      pfam08699
      Location:399 → 448
      ArgoL1; Argonaute linker 1 domain
      pfam12764
      Location:103 → 231
      Gly-rich_Ago1; Glycine-rich region of argonaut
      pfam16486
      Location:241 → 388
      ArgoN; N-terminal domain of argonaute

    2. XM_003580292.4 → XP_003580340.1  protein argonaute 1B isoform X2

      UniProtKB/TrEMBL
      I1J0N3
      Conserved Domains (2) summary
      pfam12764
      Location:87 → 215
      Gly-rich_Ago1; Glycine-rich region of argonaut
      cl00628
      Location:213 → 1094
      Piwi-like; Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The ...
    Nucleotide Protein Strain
    Heading Accession and Version

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