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    Gm20604 predicted gene 20604 [ Mus musculus (house mouse) ]

    Gene ID: 100859931, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Gm20604provided by MGI
    Official Full Name
    predicted gene 20604provided by MGI
    Primary source
    MGI:MGI:5305180
    See related
    Ensembl:ENSMUSG00000041716 AllianceGenome:MGI:5305180
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MAP-1; Moap1; AK010878-Moap1
    Summary
    This locus represents naturally occurring readthrough transcription between the neighboring AK010878 (cDNA sequence AK010878) and Moap1 (modulator of apoptosis 1) genes on chromosome 12. The readthrough transcript encodes a protein that shares sequence identity with the upstream gene product but its C-terminal region is distinct due to frameshifts relative to the downstream gene. [provided by RefSeq, Dec 2011]
    Expression
    Broad expression in CNS E18 (RPKM 12.3), testis adult (RPKM 11.4) and 26 other tissues See more
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    Genomic context

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    See Gm20604 in Genome Data Viewer
    Location:
    12 E; 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (102706089..102724069, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (102739830..102757810, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene inositol 1,3,4-triphosphate 5/6 kinase Neighboring gene VISTA enhancer mm491 Neighboring gene microRNA 1936 Neighboring gene STARR-seq mESC enhancer starr_33110 Neighboring gene STARR-seq mESC enhancer starr_33116 Neighboring gene predicted gene, 30296 Neighboring gene STARR-positive B cell enhancer ABC_E9862 Neighboring gene STARR-positive B cell enhancer ABC_E9390 Neighboring gene STARR-seq mESC enhancer starr_33118 Neighboring gene modulator of apoptosis 1 Neighboring gene STARR-seq mESC enhancer starr_33119 Neighboring gene lysosomal enzyme trafficking factor Neighboring gene GON7 subunit of KEOPS complex Neighboring gene ubiquitin protein ligase E3 component n-recognin 7 (putative) Neighboring gene BTB domain containing 7 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Readthrough Gm20604

    Included genes: Moap1, Gon7

    Clone Names

    • MGC25937, MGC60472

    General protein information

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    Preferred Names
    AK010878-Moap1 protein
    Names
    AK010878-Moap1 readthrough
    Modulator of apoptosis 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142939.1 → NP_001136411.1  AK010878-Moap1 protein

      Status: VALIDATED

      Source sequence(s)
      AC132315
      UniProtKB/TrEMBL
      F8WIA3, J3QMA2
      Related
      ENSMUSP00000133604.2, ENSMUST00000174651.2
      Conserved Domains (1) summary
      pfam15387
      Location:3 → 70
      DUF4611; Domain of unknown function (DUF4611)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      102706089..102724069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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