U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Spata31f1c spermatogenesis associated 31 subfamily F member 1C [ Mus musculus (house mouse) ]

    Gene ID: 100862261, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Spata31f1cprovided by MGI
    Official Full Name
    spermatogenesis associated 31 subfamily F member 1Cprovided by MGI
    Primary source
    MGI:MGI:5434953
    See related
    Ensembl:ENSMUSG00000093996 AllianceGenome:MGI:5434953
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam205a; Gm21598; Fam205a3; Spata31f1-3
    Summary
    Predicted to be located in membrane. Orthologous to several human genes including SPATA31F1 (SPATA31 subfamily F member 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 14.2), cortex adult (RPKM 3.3) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Spata31f1c in Genome Data Viewer
    Location:
    4 A5; 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42294525..42324072)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42294525..42324072)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene small inducible cytokine A19, pseudogene 1 Neighboring gene predicted gene 21980 Neighboring gene predicted gene, 21953 Neighboring gene predicted gene, 46892 Neighboring gene protein FAM205A-like Neighboring gene predicted gene, 21586

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    spermatogenesis-associated protein 31F1C; protein SPATA31F1-3
    Names
    family with sequence similarity 205, member A3
    protein FAM205A
    protein FAM205A-3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357589.1 → NP_001344518.1  spermatogenesis-associated protein 31F1C

      Status: VALIDATED

      Source sequence(s)
      AI429787, AI552279, AL844494
      Conserved Domains (2) summary
      pfam14650
      Location:335 → 520
      FAM75; FAM75 family
      pfam15371
      Location:3 → 57
      DUF4599; Domain of unknown function (DUF4599)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      42294525..42324072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003688793.5 → XP_003688841.1  protein SPATA31F1-3 isoform X1

      See identical proteins and their annotated locations for XP_003688841.1

      UniProtKB/Swiss-Prot
      A2APU8, C0HKD1, C0HKD2, C0HKD3
      Related
      ENSMUSP00000137159.2, ENSMUST00000178192.3
      Conserved Domains (3) summary
      pfam14650
      Location:416 → 601
      FAM75; FAM75 family
      pfam15371
      Location:52 → 138
      DUF4599; Domain of unknown function (DUF4599)
      pfam15402
      Location:1093 → 1246
      Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

    2. XM_006538394.1 → XP_006538457.1  protein SPATA31F1-3 isoform X2

      See identical proteins and their annotated locations for XP_006538457.1

      Conserved Domains (3) summary
      pfam14650
      Location:397 → 582
      FAM75; FAM75 family
      pfam15371
      Location:45 → 119
      DUF4599; Domain of unknown function (DUF4599)
      pfam15402
      Location:1074 → 1227
      Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0HKD2.1 GenPept UniProtKB/Swiss-Prot:C0HKD2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials