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    LINC02802 long intergenic non-protein coding RNA 2802 [ Homo sapiens (human) ]

    Gene ID: 100996732, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02802provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2802provided by HGNC
    Primary source
    HGNC:HGNC:54326
    See related
    Ensembl:ENSG00000232527 AllianceGenome:HGNC:54326
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in placenta (RPKM 2.6), spleen (RPKM 1.4) and 23 other tissues See more
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    Genomic context

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    See LINC02802 in Genome Data Viewer
    Location:
    1q21.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (144227030..144250352, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (143815799..143839063)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371206 Neighboring gene proton channel OTOP1-like Neighboring gene Sharpr-MPRA regulatory region 154 duplicate 2 Neighboring gene RNA, 5S ribosomal pseudogene 529 Neighboring gene D(1B) dopamine receptor-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Long Non-Coding RNA LINC02802 Regulates In Vitro Sprouting Angiogenesis by Sponging microRNA-486-5p. Rosano S, et al. Int J Mol Sci, 2022 Jan 31. PMID 35163581, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Long Non-Coding RNA LINC02802 Regulates In Vitro Sprouting Angiogenesis by Sponging microRNA-486-5p.
      Title: Long Non-Coding RNA LINC02802 Regulates In Vitro Sprouting Angiogenesis by Sponging microRNA-486-5p.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      144227030..144250352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_159162.6 RNA Sequence

      Related
      ENST00000826222.1

    2. XR_922021.4 RNA Sequence

      Related
      ENST00000826223.1

    3. XR_922018.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      143815799..143839063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_008486229.1 RNA Sequence

    2. XR_008486230.1 RNA Sequence

    3. XR_008486231.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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