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    snx3 sorting nexin 3 [ Takifugu rubripes (torafugu) ]

    Gene ID: 101069454, updated on 8-Mar-2024

    Summary

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    Gene symbol
    snx3
    Gene description
    sorting nexin 3
    See related
    Ensembl:ENSTRUG00000023871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Orthologs
    human zebrafish all
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    Genomic context

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    See snx3 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 16 NC_042300.1 (11982455..11991385, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) 16 NC_018905.1 (9599979..9610902, complement)

    Chromosome 16 - NC_042300.1Genomic Context describing neighboring genes Neighboring gene osteoclastogenesis associated transmembrane protein 1 Neighboring gene uncharacterized LOC115252974 Neighboring gene nuclear receptor subfamily 2, group E, member 1 Neighboring gene AFG1 like ATPase b Neighboring gene forkhead box O3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci. Abrahams BS, et al. Genomics, 2002 Jul. PMID 12079282
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to Golgi transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of retromer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042300.1 Reference fTakRub1.2 Primary Assembly

      Range
      11982455..11991385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003971870.3 → XP_003971919.1  sorting nexin-3

      See identical proteins and their annotated locations for XP_003971919.1

      UniProtKB/TrEMBL
      Q8JHW5
      Related
      ENSTRUP00000059241.1, ENSTRUT00000059167.1
      Conserved Domains (1) summary
      cl02563
      Location:28 → 150
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Nucleotide Protein
    Heading Accession and Version

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