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    sema4d sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [ Takifugu rubripes (torafugu) ]

    Gene ID: 101074631, updated on 8-Mar-2024

    Summary

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    Gene symbol
    sema4d
    Gene description
    sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
    See related
    Ensembl:ENSTRUG00000010805
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Orthologs
    human zebrafish all
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    Genomic context

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    See sema4d in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 6 NC_042290.1 (5412050..5438340, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) 6 NC_018895.1 (3451876..3476588, complement)

    Chromosome 6 - NC_042290.1Genomic Context describing neighboring genes Neighboring gene sphingosine 1-phosphate receptor 3 Neighboring gene SHC (Src homology 2 domain containing) transforming protein 3 Neighboring gene adducin 1 (alpha) Neighboring gene RAD1 homolog (S. pombe) Neighboring gene brix domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of alkaline phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ossification involved in bone maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-4D
    Names
    semaphorin 4D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042290.1 Reference fTakRub1.2 Primary Assembly

      Range
      5412050..5438340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029838154.1 → XP_029694014.1  semaphorin-4D isoform X3

      UniProtKB/TrEMBL
      A0A674MXR4
      Related
      ENSTRUP00000065817.1, ENSTRUT00000073127.1
      Conserved Domains (3) summary
      smart00423
      Location:524 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:585 → 670
      Ig; Immunoglobulin domain
      cl15693
      Location:53 → 522
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_029838155.1 → XP_029694015.1  semaphorin-4D isoform X4

      UniProtKB/TrEMBL
      A0A674MXR4
      Conserved Domains (3) summary
      smart00423
      Location:524 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:585 → 670
      Ig; Immunoglobulin domain
      cl15693
      Location:53 → 522
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    3. XM_011604562.2 → XP_011602864.2  semaphorin-4D isoform X1

      UniProtKB/TrEMBL
      A0A674NMC1, H2TRG9
      Related
      ENSTRUP00000027276.3, ENSTRUT00000027385.3
      Conserved Domains (3) summary
      smart00423
      Location:524 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:585 → 670
      Ig; Immunoglobulin domain
      cl15693
      Location:53 → 522
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    4. XM_011604563.2 → XP_011602865.2  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    5. XM_011604564.2 → XP_011602866.2  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    6. XM_029838149.1 → XP_029694009.1  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    7. XM_029838147.1 → XP_029694007.1  semaphorin-4D isoform X1

      UniProtKB/TrEMBL
      A0A674NMC1, H2TRG9
      Conserved Domains (3) summary
      smart00423
      Location:524 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:585 → 670
      Ig; Immunoglobulin domain
      cl15693
      Location:53 → 522
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    8. XM_029838150.1 → XP_029694010.1  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    9. XM_029838152.1 → XP_029694012.1  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    10. XM_029838148.1 → XP_029694008.1  semaphorin-4D isoform X1

      UniProtKB/TrEMBL
      A0A674NMC1, H2TRG9
      Conserved Domains (3) summary
      smart00423
      Location:524 → 551
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:585 → 670
      Ig; Immunoglobulin domain
      cl15693
      Location:53 → 522
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    11. XM_029838151.1 → XP_029694011.1  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    12. XM_011604565.2 → XP_011602867.2  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Related
      ENSTRUP00000074437.1, ENSTRUT00000070817.1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    13. XM_029838153.1 → XP_029694013.1  semaphorin-4D isoform X2

      UniProtKB/TrEMBL
      A0A674NMC1
      Conserved Domains (3) summary
      smart00423
      Location:499 → 526
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:560 → 645
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 497
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    Nucleotide Protein
    Heading Accession and Version

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