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    SNAPC1 small nuclear RNA activating complex polypeptide 1 [ Trichechus manatus latirostris (Florida manatee) ]

    Gene ID: 101347729, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SNAPC1
    Gene description
    small nuclear RNA activating complex polypeptide 1
    See related
    EnsemblRapid:ENSTMLG00000018568
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichechus manatus latirostris (sub-species: latirostris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
    Orthologs
    human mouse all
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    Genomic context

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    See SNAPC1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004443946.1 (13819591..13854452)

    NW_004443946.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene hypoxia inducible factor 1 subunit alpha Neighboring gene synaptotagmin 16 Neighboring gene tryptophan--tRNA ligase, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004443946 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snRNA transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of snRNA-activating protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    snRNA-activating protein complex subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TriManLat1.0 Primary Assembly

    Genomic

    1. NW_004443946.1 Reference TriManLat1.0 Primary Assembly

      Range
      13819591..13854452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004370929.2 → XP_004370986.1  snRNA-activating protein complex subunit 1

      UniProtKB/TrEMBL
      A0A2Y9DBI5
      Related
      ENSTMLP00000026015.1, ENSTMLT00000027905.1
      Conserved Domains (1) summary
      pfam09808
      Location:7 → 191
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    RNA

    1. XR_002823113.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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