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    LOC101398336 midasin AAA ATPase 1 [ Ceratotherium simum simum (southern white rhinoceros) ]

    Gene ID: 101398336, updated on 8-Mar-2024

    Summary

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    Gene symbol
    LOC101398336
    Gene description
    midasin AAA ATPase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ceratotherium simum simum (sub-species: simum)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium
    Also known as
    MDN1
    Orthologs
    human mouse all
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    Genomic context

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    See LOC101398336 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    102
    Annotation release Status Assembly Chr Location
    101 current CerSimSim1.0 (GCF_000283155.1) Unplaced Scaffold NW_004454162.1 (14294457..14457842, complement)

    NW_004454162.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 6 Neighboring gene LYR motif containing 2 Neighboring gene uncharacterized LOC106800556 Neighboring gene caspase 8 associated protein 2 Neighboring gene gap junction protein alpha 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004454162.1 Unplaced Scaffold Reference CerSimSim1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of preribosome, large subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    midasin
    Names
    MDN1, midasin homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ceratotherium simum simum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CerSimSim1.0 Primary Assembly

    Genomic

    1. NW_004454162.1 Reference CerSimSim1.0 Primary Assembly

      Range
      14294457..14457842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014781110.1 → XP_014636596.1  midasin

      Conserved Domains (7) summary
      smart00382
      Location:1383 → 1540
      AAA; ATPases associated with a variety of cellular activities
      cd01460
      Location:5331 → 5601
      vWA_midasin; VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The ...
      cl14192
      Location:4942 → 5163
      Phage_T7_Capsid; Phage T7 capsid assembly protein
      pfam03247
      Location:5149 → 5245
      Prothymosin; Prothymosin/parathymosin family
      pfam07728
      Location:1385 → 1540
      AAA_5; AAA domain (dynein-related subfamily)
      cl21455
      Location:1079 → 1215
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
      cl22451
      Location:4911 → 5038
      ASF1_hist_chap; ASF1 like histone chaperone
    Nucleotide Protein
    Heading Accession and Version

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