U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    NXF1 nuclear RNA export factor 1 [ Dasypus novemcinctus (nine-banded armadillo) ]

    Gene ID: 101437617, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    NXF1
    Gene description
    nuclear RNA export factor 1
    See related
    Ensembl:ENSDNOG00000024303
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dasypus novemcinctus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Dasypodidae; Dasypus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NXF1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_07 current mDasNov1.hap2 (GCF_030445035.1) 10 NC_080682.1 (11699696..11714592)
    102 previous assembly Dasnov3.0 (GCF_000208655.1) Unplaced Scaffold NW_004463163.1 (286903..301808)

    Chromosome 10 - NC_080682.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131279988 Neighboring gene testis expressed 54 Neighboring gene syntaxin 5 Neighboring gene transmembrane protein 223 Neighboring gene transmembrane protein 179B Neighboring gene TATA-box binding protein associated factor 6 like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear RNA export factor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030445035.1-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mDasNov1.hap2

    Genomic

    1. NC_080682.1 Reference mDasNov1.hap2

      Range
      11699696..11714592
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058305283.1 → XP_058161266.1  nuclear RNA export factor 1 isoform X2

    2. XM_004449224.4 → XP_004449281.1  nuclear RNA export factor 1 isoform X1

      Related
      ENSDNOP00000017447.2
      Conserved Domains (7) summary
      smart00804
      Location:555 → 617
      TAP_C; C-terminal domain of vertebrate Tap protein
      cd00116
      Location:205 → 351
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00780
      Location:381 → 537
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:223 → 265
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:115 → 196
      Tap-RNA_bind; Tap, RNA-binding
      pfam12799
      Location:290 → 328
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:264 → 326
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.