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    rnf180a ring finger protein 180a [ Maylandia zebra (zebra mbuna) ]

    Gene ID: 101467977, updated on 8-Mar-2024

    Summary

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    Gene symbol
    rnf180a
    Gene description
    ring finger protein 180a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Maylandia zebra
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
    Also known as
    rnf180; si:dkey-250l23.4
    Orthologs
    zebrafish all
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    Genomic context

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    See rnf180a in Genome Data Viewer
    Location:
    chromosome: LG12
    Exon count:
    4
    Annotation release Status Assembly LG Location
    104 current M_zebra_UMD2a (GCF_000238955.4) LG12 NC_036791.1 (21748707..21755243)
    101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531725.1 (4914625..4921173, complement)

    Linkage Group LG12 - NC_036791.1Genomic Context describing neighboring genes Neighboring gene importin 11 Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1A a Neighboring gene regulator of G protein signaling 7 binding protein a Neighboring gene complement component 7a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in norepinephrine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in serotonin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF180
    Names
    ring finger protein 180

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M_zebra_UMD2a Primary Assembly

    Genomic

    1. NC_036791.1 Reference M_zebra_UMD2a Primary Assembly

      Range
      21748707..21755243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004547193.3 → XP_004547250.1  E3 ubiquitin-protein ligase RNF180 isoform X1

      Conserved Domains (1) summary
      cd16554
      Location:345 → 388
      RING-HC_RNF180; RING finger, HC subclass, found in RING finger protein 180 (RNF180) and similar proteins

    2. XM_004547194.3 → XP_004547251.1  E3 ubiquitin-protein ligase RNF180 isoform X2

      Conserved Domains (1) summary
      cd00162
      Location:253 → 298
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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