U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TRIM46 tripartite motif containing 46 [ Condylura cristata (star-nosed mole) ]

    Gene ID: 101632769, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TRIM46
    Gene description
    tripartite motif containing 46
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Condylura cristata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRIM46 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567141.1 (4501967..4511308)

    NW_004567141.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 50 member 1 Neighboring gene dolichyl-phosphate mannosyltransferase subunit 3, regulatory Neighboring gene keratinocyte associated protein 2 Neighboring gene mucin 1, cell surface associated Neighboring gene thrombospondin 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_004567141.1 Unplaced Scaffold Reference ConCri1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tripartite motif-containing protein 46

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ConCri1.0

    Genomic

    1. NW_004567141.1 Reference ConCri1.0

      Range
      4501967..4511308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004693796.2 → XP_004693853.1  tripartite motif-containing protein 46 isoform X1

      Conserved Domains (5) summary
      cd00063
      Location:484 → 565
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00643
      Location:262 → 303
      zf-B_box; B-box zinc finger
      pfam13923
      Location:73 → 105
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
      cd12895
      Location:572 → 781
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cl23765
      Location:310 → 435
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    2. XM_012733362.1 → XP_012588816.1  tripartite motif-containing protein 46 isoform X3

      Conserved Domains (5) summary
      cd00063
      Location:421 → 502
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00643
      Location:199 → 240
      zf-B_box; B-box zinc finger
      pfam13923
      Location:10 → 42
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
      cd12895
      Location:509 → 718
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cl23765
      Location:247 → 372
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    3. XM_004693797.2 → XP_004693854.1  tripartite motif-containing protein 46 isoform X2

      Conserved Domains (5) summary
      cd00063
      Location:431 → 512
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00643
      Location:209 → 250
      zf-B_box; B-box zinc finger
      pfam13923
      Location:20 → 52
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
      cd12895
      Location:519 → 728
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cl23765
      Location:257 → 382
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.