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    Ptprcap protein tyrosine phosphatase receptor type C associated protein [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101702558, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Ptprcap
    Gene description
    protein tyrosine phosphatase receptor type C associated protein
    Locus tag
    GW7_14689
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Ptprcap in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624767.1 (19087197..19089999)

    NW_004624767.1Genomic Context describing neighboring genes Neighboring gene calcium-binding protein 4 Neighboring gene G protein-coupled receptor 152 Neighboring gene coronin 1B Neighboring gene ribosomal protein S6 kinase B2 Neighboring gene carnosine synthase 1 Neighboring gene uncharacterized LOC106009983

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624767 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein tyrosine phosphatase receptor type C-associated protein
    Names
    Protein tyrosine phosphatase receptor type C-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624767.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      19087197..19089999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004852237.2 → XP_004852294.1  protein tyrosine phosphatase receptor type C-associated protein

      See identical proteins and their annotated locations for XP_004852294.1

      UniProtKB/TrEMBL
      G5BSA6
      Conserved Domains (1) summary
      pfam15713
      Location:54 → 191
      PTPRCAP; Protein tyrosine phosphatase receptor type C-associated
    Nucleotide Protein
    Heading Accession and Version

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