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    SEMA6A semaphorin 6A [ Anas platyrhynchos (mallard) ]

    Gene ID: 101795654, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SEMA6A
    Gene description
    semaphorin 6A
    Locus tag
    Anapl_14822
    See related
    EnsemblRapid:ENSAPLG00030009515
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA6A in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) Z NC_051804.1 (67704742..67822694)
    103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) Z NC_040075.1 (62375348..62489363)

    Chromosome Z - NC_051804.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119714510 Neighboring gene uncharacterized LOC113840281 Neighboring gene translation initiation factor IF-2-like Neighboring gene COMM domain containing 10 Neighboring gene ARF like GTPase 14 effector protein like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of neuron migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-6A
    Names
    Semaphorin-6A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051804.1 Reference ZJU1.0 Primary Assembly

      Range
      67704742..67822694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027446583.2 → XP_027302384.2  semaphorin-6A isoform X1

      UniProtKB/TrEMBL
      A0A493TY07, R0LJP9
      Conserved Domains (2) summary
      cd11266
      Location:48 → 513
      Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
      pfam01437
      Location:514 → 544
      PSI; Plexin repeat

    2. XM_038171433.1 → XP_038027361.1  semaphorin-6A isoform X2

      UniProtKB/TrEMBL
      A0A8B9R2T6, R0LJP9, U3J4F0
      Related
      ENSAPLP00030017959.1, ENSAPLT00030025103.1
      Conserved Domains (2) summary
      cd11266
      Location:48 → 513
      Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
      pfam01437
      Location:514 → 544
      PSI; Plexin repeat

    3. XM_038171434.1 → XP_038027362.1  semaphorin-6A isoform X3

      UniProtKB/TrEMBL
      A0A493T165, A0A8B9QZB0, R0LJP9
      Related
      ENSAPLP00030017849.1, ENSAPLT00030024886.1
      Conserved Domains (2) summary
      cd11266
      Location:48 → 513
      Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
      pfam01437
      Location:514 → 544
      PSI; Plexin repeat

    4. XM_038171435.1 → XP_038027363.1  semaphorin-6A isoform X4

      UniProtKB/TrEMBL
      R0LJP9
      Related
      ENSAPLP00030017909.1, ENSAPLT00030025003.1
      Conserved Domains (2) summary
      cd11266
      Location:48 → 513
      Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
      pfam01437
      Location:514 → 544
      PSI; Plexin repeat

    5. XM_038171431.1 → XP_038027359.1  semaphorin-6A isoform X1

      UniProtKB/TrEMBL
      A0A493TY07, R0LJP9
      Related
      ENSAPLP00030017787.1, ENSAPLT00030024774.1
      Conserved Domains (2) summary
      cd11266
      Location:48 → 513
      Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
      pfam01437
      Location:514 → 544
      PSI; Plexin repeat

    6. XM_038171432.1 → XP_038027360.1  semaphorin-6A isoform X1

      UniProtKB/TrEMBL
      A0A493TY07, R0LJP9
      Conserved Domains (2) summary
      cd11266
      Location:48 → 513
      Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
      pfam01437
      Location:514 → 544
      PSI; Plexin repeat
    Nucleotide Protein
    Heading Accession and Version

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