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    LOC101867194 histone-lysine N-methyltransferase SETMAR [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 101867194, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC101867194
    Gene description
    histone-lysine N-methyltransferase SETMAR
    See related
    Ensembl:ENSMFAG00000029288
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LOC101867194 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 2 NC_088376.1 (142525868..142546768)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 2 NC_052256.1 (60434763..60448812, complement)

    Chromosome 2 - NC_088376.1Genomic Context describing neighboring genes Neighboring gene polyribonucleotide nucleotidyltransferase 1, mitochondrial-like Neighboring gene uncharacterized LOC102121326 Neighboring gene sulfatase modifying factor 1 Neighboring gene uncharacterized LOC135969370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA topoisomerase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K36 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA endodeoxyribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA double-strand break processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic DNA integrity checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase SETMAR

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088376.1 Reference T2T-MFA8v1.0

      Range
      142525868..142546768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005547658.4 → XP_005547715.3  histone-lysine N-methyltransferase SETMAR isoform X2

      UniProtKB/TrEMBL
      A0A2K5UME4

    2. XM_045384778.2 → XP_045240713.2  histone-lysine N-methyltransferase SETMAR isoform X3

    3. XM_065538900.1 → XP_065394972.1  histone-lysine N-methyltransferase SETMAR isoform X1

      UniProtKB/TrEMBL
      A0A2K5UME4
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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