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    LINC00682 long intergenic non-protein coding RNA 682 [ Homo sapiens (human) ]

    Gene ID: 101927074, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00682provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 682provided by HGNC
    Primary source
    HGNC:HGNC:44466
    See related
    Ensembl:ENSG00000245870 AllianceGenome:HGNC:44466
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in adrenal (RPKM 1.5), duodenum (RPKM 0.1) and 1 other tissue See more
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    Genomic context

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    See LINC00682 in Genome Data Viewer
    Location:
    4p13
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (41879521..41882611, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (41853330..41856420, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (41881538..41884628, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene PHOX2B antisense RNA 1 Neighboring gene RNA, U1 small nuclear 49, pseudogene Neighboring gene Sharpr-MPRA regulatory region 462 Neighboring gene high mobility group box 1 pseudogene 28 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:41881826-41882578 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:41883331-41884082 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15389 Neighboring gene uncharacterized LOC124900696 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:41910569-41911460 Neighboring gene uncharacterized LOC105374426 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:41914902-41916101

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of differential methylation between primary and recurrent hepatocellular carcinomas. Cui C, et al. Mol Carcinog, 2016 Jul. PMID 26138747
    2. LINC00682 inhibits gastric cancer cell progression via targeting microRNA-9-LMX1A signaling axis. Zhang X, et al. Aging (Albany NY), 2019 Dec 11. PMID 31822638, Free PMC Article
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104143.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC025350, DA908871
      Related
      ENST00000499082.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      41879521..41882611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      41853330..41856420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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