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    LINC02254 long intergenic non-protein coding RNA 2254 [ Homo sapiens (human) ]

    Gene ID: 101927286, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02254provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2254provided by HGNC
    Primary source
    HGNC:HGNC:53152
    See related
    Ensembl:ENSG00000251209 AllianceGenome:HGNC:53152
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02254 in Genome Data Viewer
    Location:
    15q26.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (97370371..97521811, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (95135627..95287089, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (97913601..98065041, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2253 Neighboring gene uncharacterized LOC105371006 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:97838555-97839198 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:97839199-97839840 Neighboring gene RNA, 7SL, cytoplasmic 677, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:97929831-97931030 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:97961806-97962372 Neighboring gene RNA, 5S ribosomal pseudogene 401 Neighboring gene uncharacterized LOC101927310 Neighboring gene uncharacterized LOC105371007 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:98172111-98172323 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:98234570-98235769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98236083-98236582 Neighboring gene long intergenic non-protein coding RNA 923 Neighboring gene MPRA-validated peak2442 silencer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120324.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC038379
      Related
      ENST00000558621.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      97370371..97521811 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      95135627..95287089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials