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    LOC101927967 uncharacterized LOC101927967 [ Homo sapiens (human) ]

    Gene ID: 101927967, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC101927967
    Gene description
    uncharacterized LOC101927967
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC101927967 in Genome Data Viewer
    Location:
    2p12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (77743696..78290731, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (77748722..78295698, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (77970822..78517857, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene leucine rich repeat transmembrane neuronal 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:77245203-77245860 Neighboring gene LRRTM4 antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:77314877-77315380 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:77315381-77315885 Neighboring gene 2p12 distal HERV-mediated recombination region Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:77319973-77320736 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:77320737-77321498 Neighboring gene NANOG hESC enhancer GRCh37_chr2:77614348-77614916 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:77648449-77648664 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:77749816-77750481 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:77817198-77817735 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:77817736-77818272 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:77820253-77820819 Neighboring gene tRNA-Pro (anticodon AGG) 5-1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:77981196-77981732 Neighboring gene RPL38 pseudogene 2 Neighboring gene uncharacterized LOC105374817 Neighboring gene 2p12 proximal HERV-mediated recombination region Neighboring gene uncharacterized LOC105374816 Neighboring gene long intergenic non-protein coding RNA 1851 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:78262643-78263582 Neighboring gene uncharacterized LOC101927948 Neighboring gene small NF90 (ILF3) associated RNA H Neighboring gene MPRA-validated peak3749 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:78557243-78557744 Neighboring gene uncharacterized LOC124906027 Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit X pseudogene Neighboring gene CYCS pseudogene 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110288.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC105399, DT216378

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      77743696..78290731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      77748722..78295698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)