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    S1PR1-DT S1PR1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101928370, updated on 10-Dec-2024

    Summary

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    Official Symbol
    S1PR1-DTprovided by HGNC
    Official Full Name
    S1PR1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55842
    See related
    AllianceGenome:HGNC:55842
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LISPR1
    Expression
    Broad expression in spleen (RPKM 2.6), fat (RPKM 2.3) and 19 other tissues See more
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    Genomic context

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    See S1PR1-DT in Genome Data Viewer
    Location:
    1p21.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (101234873..101236528, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (101083736..101085392, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (101700429..101702084, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1394 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1396 Neighboring gene MPRA-validated peak339 silencer Neighboring gene sphingosine-1-phosphate receptor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1397 Neighboring gene ribosomal protein S20 pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Long noncoding RNA LISPR1 is required for S1P signaling and endothelial cell function. Josipovic I, et al. J Mol Cell Cardiol, 2018 Mar. PMID 29408197

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • Long intergenic noncoding RNA antisense to S1PR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104626.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA242798, AA242909, AL109741

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      101234873..101236528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      101083736..101085392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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