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    LINC00463 long intergenic non-protein coding RNA 463 [ Homo sapiens (human) ]

    Gene ID: 101928922, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00463provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 463provided by HGNC
    Primary source
    HGNC:HGNC:42813
    See related
    Ensembl:ENSG00000234056 AllianceGenome:HGNC:42813
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AMER2-AS1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00463 in Genome Data Viewer
    Location:
    13q12.13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (25172824..25180001, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (24382498..24389679, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (25746962..25754139, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900613 Neighboring gene uncharacterized LOC105370120 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:25710909-25711473 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:25711474-25712037 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5183 Neighboring gene APC membrane recruitment protein 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:25747285-25748484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5184 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7481 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7482 Neighboring gene long intergenic non-protein coding RNA 1053 Neighboring gene ribosomal protein L23a pseudogene 69

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • AMER2 antisense RNA 1 (head to head)
    • TCONS_l2_00007499

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120428.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA719680, BU165513, BU182247
      Related
      ENST00000413501.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      25172824..25180001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      24382498..24389679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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