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    LOC102039841 mothers against decapentaplegic homolog 6 [ Geospiza fortis (medium ground-finch) ]

    Gene ID: 102039841, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC102039841
    Gene description
    mothers against decapentaplegic homolog 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geospiza fortis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
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    Genomic context

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    See LOC102039841 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054546.1 (734150..745634)

    NW_005054546.1Genomic Context describing neighboring genes Neighboring gene CDC28 protein kinase regulatory subunit 1B Neighboring gene flavin adenine dinucleotide synthetase 1 Neighboring gene zinc finger and BTB domain containing 7B Neighboring gene translocon-associated protein subunit beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005054546 Unplaced Scaffold Reference GeoFor_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables I-SMAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription regulator inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in SMAD protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transforming growth factor beta receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of heteromeric SMAD protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mothers against decapentaplegic homolog 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GeoFor_1.0

    Genomic

    1. NW_005054546.1 Reference GeoFor_1.0

      Range
      734150..745634
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031063982.1 → XP_030919842.1  mothers against decapentaplegic homolog 6

      UniProtKB/TrEMBL
      A0A8N5F1J7
      Conserved Domains (2) summary
      cd10489
      Location:8 → 132
      MH1_SMAD_6_7; N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7
      cl00056
      Location:174 → 224
      MH2; C-terminal Mad Homology 2 (MH2) domain
    Nucleotide Protein
    Heading Accession and Version

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