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    prox2 prospero homeobox 2 [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102219984, updated on 10-Mar-2024

    Summary

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    Gene symbol
    prox2
    Gene description
    prospero homeobox 2
    See related
    Ensembl:ENSXMAG00000014663
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    zebrafish all
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    Genomic context

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    See prox2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 19 NC_036461.1 (9183849..9195199, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372198.1 (786006..795448)

    Chromosome 19 - NC_036461.1Genomic Context describing neighboring genes Neighboring gene G-patch domain containing 2 like Neighboring gene estrogen-related receptor beta Neighboring gene dihydrolipoamide S-succinyltransferase Neighboring gene ribosomal protein S6 kinase-like 1 Neighboring gene olfactomedin 4, tandem duplicate 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prospero homeobox protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036461.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      9183849..9195199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023352463.1 → XP_023208231.1  prospero homeobox protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3B5R4U5
      Conserved Domains (1) summary
      pfam05044
      Location:494 → 645
      HPD; Homeo-prospero domain

    2. XM_005797766.2 → XP_005797823.1  prospero homeobox protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3B5R4U5, M4AJQ0
      Conserved Domains (1) summary
      pfam05044
      Location:520 → 671
      HPD; Homeo-prospero domain

    3. XM_023352462.1 → XP_023208230.1  prospero homeobox protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3B5R4U5, M4AJQ0
      Related
      ENSXMAP00000014694.2, ENSXMAT00000014714.2
      Conserved Domains (1) summary
      pfam05044
      Location:520 → 671
      HPD; Homeo-prospero domain
    Nucleotide Protein Strain
    Heading Accession and Version

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