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    efs embryonal Fyn-associated substrate [ Haplochromis burtoni (Burton's mouthbrooder) ]

    Gene ID: 102291838, updated on 12-Sep-2024

    Summary

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    Gene symbol
    efs
    Gene description
    embryonal Fyn-associated substrate
    See related
    Ensembl:ENSHBUG00000020283
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Haplochromis burtoni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See efs in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024583024.1 (186749..197230, complement)
    101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005180100.1 (40591..51057)

    NW_024583024.1Genomic Context describing neighboring genes Neighboring gene ajuba LIM protein Neighboring gene apoptotic chromatin condensation inducer 1b Neighboring gene dehydrogenase/reductase (SDR family) member 4 Neighboring gene TERF1 (TRF1)-interacting nuclear factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    embryonal Fyn-associated substrate

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_Asbu1 Primary Assembly

    Genomic

    1. NW_024583024.1 Reference NCSU_Asbu1 Primary Assembly

      Range
      186749..197230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005949430.3 → XP_005949492.1  embryonal Fyn-associated substrate

      UniProtKB/TrEMBL
      A0A3Q2X2T1
      Related
      ENSHBUP00000033407.1
      Conserved Domains (2) summary
      cd12003
      Location:6 → 67
      SH3_EFS; Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate
      cl13463
      Location:838 → 967
      FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module
    Nucleotide Protein
    Heading Accession and Version

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