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    rnf180a ring finger protein 180a [ Haplochromis burtoni (Burton's mouthbrooder) ]

    Gene ID: 102298813, updated on 10-Mar-2024

    Summary

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    Gene symbol
    rnf180a
    Gene description
    ring finger protein 180a
    See related
    Ensembl:ENSHBUG00000004227
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Haplochromis burtoni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
    Also known as
    rnf180; si:dkey-250l23.4
    Orthologs
    zebrafish all
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    Genomic context

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    See rnf180a in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582395.1 (1073880..1080293)
    101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179427.1 (1071674..1078037)

    NW_024582395.1Genomic Context describing neighboring genes Neighboring gene importin 11 Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1A a Neighboring gene regulator of G protein signaling 7 binding protein a Neighboring gene complement component 7a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in norepinephrine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in serotonin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein rnf180a
    Names
    ring finger protein 180

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_Asbu1 Primary Assembly

    Genomic

    1. NW_024582395.1 Reference NCSU_Asbu1 Primary Assembly

      Range
      1073880..1080293
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005918995.2 → XP_005919057.1  uncharacterized protein rnf180a

      UniProtKB/TrEMBL
      A0A3Q2UYJ8
      Related
      ENSHBUP00000002990.1
      Conserved Domains (1) summary
      cd00162
      Location:346 → 391
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version

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