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    CCNT1 cyclin T1 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102358846, updated on 26-Apr-2024

    Summary

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    Gene symbol
    CCNT1
    Gene description
    cyclin T1
    See related
    Ensembl:ENSLACG00000017559
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
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    Genomic context

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    See CCNT1 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 28 NC_088166.1 (8227451..8259337, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819108.1 (2192701..2216578)

    Chromosome 28 - NC_088166.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene ring finger protein 41 Neighboring gene sperm microtubule inner protein 11-like Neighboring gene adenylate cyclase 6a Neighboring gene uncharacterized LOC106702732

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin/CDK positive transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-T1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088166.1 Reference fLatCha1.pri

      Range
      8227451..8259337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005991425.3 → XP_005991487.1  cyclin-T1 isoform X2

      UniProtKB/TrEMBL
      H3BDK5
      Related
      ENSLACP00000019976.1
      Conserved Domains (1) summary
      pfam00134
      Location:15 → 151
      Cyclin_N; Cyclin, N-terminal domain

    2. XM_005991424.3 → XP_005991486.1  cyclin-T1 isoform X1

      UniProtKB/TrEMBL
      H3BDK5
      Conserved Domains (1) summary
      pfam00134
      Location:15 → 151
      Cyclin_N; Cyclin, N-terminal domain

    RNA

    1. XR_001352724.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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