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    TRIM17 tripartite motif containing 17 [ Tupaia chinensis (Chinese tree shrew) ]

    Gene ID: 102471374, updated on 10-Mar-2024

    Summary

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    Gene symbol
    TRIM17
    Gene description
    tripartite motif containing 17
    Locus tag
    TREES_T100016850
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tupaia chinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM17 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159672.1 (8754997..8766903, complement)

    NW_006159672.1Genomic Context describing neighboring genes Neighboring gene translation machinery-associated protein 16 pseudogene Neighboring gene tripartite motif containing 11 Neighboring gene H3.4 histone, cluster member Neighboring gene histone H2A type 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006159672 Unplaced Scaffold Reference TupChi_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TupChi_1.0

    Genomic

    1. NW_006159672.1 Reference TupChi_1.0

      Range
      8754997..8766903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006146987.2 → XP_006147049.1  E3 ubiquitin-protein ligase TRIM17

      UniProtKB/TrEMBL
      L9KWP1
      Conserved Domains (4) summary
      smart00336
      Location:115 → 156
      BBOX; B-Box-type zinc finger
      cd00162
      Location:36 → 88
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd15812
      Location:317 → 493
      SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
      cl19511
      Location:157 → 280
      DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)
    Nucleotide Protein
    Heading Accession and Version

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