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    LOC102480646 putative RNA-binding protein Luc7-like 2 [ Tupaia chinensis (Chinese tree shrew) ]

    Gene ID: 102480646, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC102480646
    Gene description
    putative RNA-binding protein Luc7-like 2
    Locus tag
    TREES_T100005160
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tupaia chinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
    Also known as
    LUC7L2
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    Genomic context

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    See LOC102480646 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159610.1 (6917909..6997950)

    NW_006159610.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene formation of mitochondrial complex V assembly factor 1 homolog Neighboring gene 40S ribosomal protein S29 pseudogene Neighboring gene killer cell lectin like receptor G2 Neighboring gene C-type lectin domain family 2 member L

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006159610 Unplaced Scaffold Reference TupChi_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative RNA-binding protein Luc7-like 2
    Names
    LUC7-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TupChi_1.0

    Genomic

    1. NW_006159610.1 Reference TupChi_1.0

      Range
      6917909..6997950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006145036.3 → XP_006145098.1  putative RNA-binding protein Luc7-like 2 isoform X2

      See identical proteins and their annotated locations for XP_006145098.1

      Conserved Domains (1) summary
      pfam03194
      Location:5 → 241
      LUC7; LUC7 N_terminus

    2. XM_006145035.3 → XP_006145097.1  putative RNA-binding protein Luc7-like 2 isoform X1

      Conserved Domains (1) summary
      pfam03194
      Location:43 → 257
      LUC7; LUC7 N_terminus

    3. XM_014586488.2 → XP_014441974.1  putative RNA-binding protein Luc7-like 2 isoform X4

      Conserved Domains (1) summary
      pfam03194
      Location:1 → 188
      LUC7; LUC7 N_terminus

    4. XM_027770505.1 → XP_027626306.1  putative RNA-binding protein Luc7-like 2 isoform X4

      Conserved Domains (1) summary
      pfam03194
      Location:1 → 188
      LUC7; LUC7 N_terminus

    5. XM_027770504.1 → XP_027626305.1  putative RNA-binding protein Luc7-like 2 isoform X3

      Conserved Domains (1) summary
      pfam03194
      Location:26 → 240
      LUC7; LUC7 N_terminus
    Nucleotide Protein
    Heading Accession and Version

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