U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC102565019 Krueppel-like factor 5 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102565019, updated on 8-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC102565019
    Gene description
    Krueppel-like factor 5
    Locus tag
    Y1Q_0007355
    See related
    EnsemblRapid:ENSAMIG00015002406
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Also known as
    KLF8; KLF8L
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC102565019 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 8 NC_081831.1 (34587543..34633294)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708049.1 (3934036..3979835)

    Chromosome 8 - NC_081831.1Genomic Context describing neighboring genes Neighboring gene TNFAIP3-interacting protein 3 Neighboring gene KLF transcription factor 8 Neighboring gene uncharacterized LOC109281789 Neighboring gene uncharacterized LOC109281788 Neighboring gene uncharacterized LOC109281790

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Krueppel-like factor 5
    Names
    Kruppel-like factor 8

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081831.1 Reference rAllMis1 Primary Assembly

      Range
      34587543..34633294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014609926.3 → XP_014465412.2  Krueppel-like factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A151P7J3
      Related
      ENSAMIP00015002908.1, ENSAMIT00015004250.1

    2. XM_006278085.4 → XP_006278147.2  Krueppel-like factor 5 isoform X2

      Related
      ENSAMIP00015002894.1, ENSAMIT00015004236.1
      Conserved Domains (5) summary
      COG5048
      Location:259 → 436
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:357 → 376
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:352 → 376
      zf-C2H2; Zinc finger, C2H2 type
      pfam03153
      Location:126 → 293
      TFIIA; Transcription factor IIA, alpha/beta subunit
      pfam13465
      Location:398 → 423
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.