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    RUNX3 RUNX family transcription factor 3 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102573611, updated on 8-May-2024

    Summary

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    Gene symbol
    RUNX3
    Gene description
    RUNX family transcription factor 3
    Locus tag
    Y1Q_0023581
    See related
    EnsemblRapid:ENSAMIG00015018069
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See RUNX3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 6 NC_081829.1 (3842921..3944408)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713083.1 (602454..700205)

    Chromosome 6 - NC_081829.1Genomic Context describing neighboring genes Neighboring gene arginine and serine rich protein 1 Neighboring gene SYF2 pre-mRNA splicing factor Neighboring gene uncharacterized LOC109286034 Neighboring gene uncharacterized LOC109286013 Neighboring gene chloride intracellular channel 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hemopoiesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    runt-related transcription factor 3
    Names
    runt related transcription factor 3
    runt-related transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081829.1 Reference rAllMis1 Primary Assembly

      Range
      3842921..3944408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019498910.2 → XP_019354455.1  runt-related transcription factor 3 isoform X4

      UniProtKB/TrEMBL
      A0A151MMI5

    2. XM_019498909.2 → XP_019354454.1  runt-related transcription factor 3 isoform X3

    3. XM_019498908.2 → XP_019354453.1  runt-related transcription factor 3 isoform X2

    4. XM_006276770.4 → XP_006276832.2  runt-related transcription factor 3 isoform X1

      UniProtKB/TrEMBL
      A0A151MMI5
      Related
      ENSAMIP00015024481.1, ENSAMIT00015034214.1
    Nucleotide Protein
    Heading Accession and Version

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