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    fam168a family with sequence similarity 168 member A [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102690525, updated on 21-Oct-2024

    Summary

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    Gene symbol
    fam168a
    Gene description
    family with sequence similarity 168 member A
    See related
    Ensembl:ENSLOCG00000006237
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    human zebrafish all
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    Genomic context

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    See fam168a in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 5 NC_090700.1 (9525282..9588278)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG3 NC_023181.1 (9507042..9573309)

    Chromosome 5 - NC_090700.1Genomic Context describing neighboring genes Neighboring gene RAB6A, member RAS oncogene family Neighboring gene pleckstrin homology domain containing B1 Neighboring gene RELT TNF receptor Neighboring gene rho guanine nucleotide exchange factor 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAM168A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090700.1 Reference fLepOcu1.hap2

      Range
      9525282..9588278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015341550.2 → XP_015197036.1  protein FAM168A isoform X1

      UniProtKB/TrEMBL
      W5MGM0
      Conserved Domains (1) summary
      pfam14944
      Location:32 → 266
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

    2. XM_006627802.3 → XP_006627865.1  protein FAM168A isoform X4

      UniProtKB/TrEMBL
      W5MGM0
      Related
      ENSLOCP00000007529.1
      Conserved Domains (1) summary
      pfam14944
      Location:1 → 235
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

    3. XM_015341551.2 → XP_015197037.1  protein FAM168A isoform X1

      UniProtKB/TrEMBL
      W5MGM0
      Conserved Domains (1) summary
      pfam14944
      Location:32 → 266
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

    4. XM_015341548.2 → XP_015197034.1  protein FAM168A isoform X1

      UniProtKB/TrEMBL
      W5MGM0
      Conserved Domains (1) summary
      pfam14944
      Location:32 → 266
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

    5. XM_015341549.2 → XP_015197035.1  protein FAM168A isoform X2

      UniProtKB/TrEMBL
      W5MGM0, W5MGP2
      Related
      ENSLOCP00000007551.1
      Conserved Domains (1) summary
      pfam14944
      Location:32 → 265
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

    6. XM_006627804.3 → XP_006627867.1  protein FAM168A isoform X3

      Conserved Domains (1) summary
      pfam14944
      Location:32 → 224
      TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
    Nucleotide Protein
    Heading Accession and Version

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