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    traip TRAF-interacting protein [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102693416, updated on 23-Oct-2024

    Summary

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    Gene symbol
    traip
    Gene description
    TRAF-interacting protein
    See related
    Ensembl:ENSLOCG00000010841
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    human zebrafish all
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    Genomic context

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    See traip in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 4 NC_090699.1 (54090142..54102421, complement)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG5 NC_023183.1 (27024529..27036813, complement)

    Chromosome 4 - NC_090699.1Genomic Context describing neighboring genes Neighboring gene inka box actin regulator 1 Neighboring gene ubiquitin-like modifier activating enzyme 7 Neighboring gene caM kinase-like vesicle-associated protein Neighboring gene uncharacterized LOC107077382 Neighboring gene uncharacterized LOC102697878

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of DNA damage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRAIP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090699.1 Reference fLepOcu1.hap2

      Range
      54090142..54102421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015347314.2 → XP_015202800.1  E3 ubiquitin-protein ligase TRAIP

      UniProtKB/TrEMBL
      W5MY34
      Related
      ENSLOCP00000013293.1
      Conserved Domains (1) summary
      pfam13639
      Location:7 → 50
      zf-RING_2; Ring finger domain

    2. XM_015347315.2 → XP_015202801.1  E3 ubiquitin-protein ligase TRAIP

      UniProtKB/TrEMBL
      W5MY34
      Conserved Domains (1) summary
      pfam13639
      Location:7 → 50
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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