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    PPM1B-DT PPM1B divergent transcript [ Homo sapiens (human) ]

    Gene ID: 102723904, updated on 28-Oct-2024

    Summary

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    Official Symbol
    PPM1B-DTprovided by HGNC
    Official Full Name
    PPM1B divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55161
    See related
    AllianceGenome:HGNC:55161
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.7) See more
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    Genomic context

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    See PPM1B-DT in Genome Data Viewer
    Location:
    2p21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (44161184..44168792, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (44166527..44174141, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15683 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:44352521-44353222 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44361873-44362746 Neighboring gene RNA, U6 small nuclear 566, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11430 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11431 Neighboring gene decaprenyl diphosphate synthase subunit 1 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 13633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15684 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1B Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:44415461-44416353 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:44461053-44461554 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:44461555-44462054 Neighboring gene uncharacterized LOC124906174 Neighboring gene ribosomal protein L12 pseudogene 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      44161184..44168792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_940034.3 RNA Sequence

    2. XR_940035.3 RNA Sequence

    3. XR_940036.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      44166527..44174141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072019.1 RNA Sequence

    2. XR_007072017.1 RNA Sequence

    3. XR_007072018.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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