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    WHRN whirlin [ Myotis davidii ]

    Gene ID: 102757360, updated on 30-Mar-2024

    Summary

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    Gene symbol
    WHRN
    Gene description
    whirlin
    Locus tag
    MDA_GLEAN10014431
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis davidii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See WHRN in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current ASM32734v1 (GCF_000327345.1) Unplaced Scaffold NW_006297145.1 (64916..125371, complement)

    NW_006297145.1Genomic Context describing neighboring genes Neighboring gene alpha-1-acid glycoprotein-like Neighboring gene AT-hook transcription factor Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene transmembrane protein 268

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006297145.1 Unplaced Scaffold Reference ASM32734v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auditory receptor cell stereocilium organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor inner segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of stereocilia ankle link complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium tip IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: whirlin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Myotis davidii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM32734v1

    Genomic

    1. NW_006297145.1 Reference ASM32734v1

      Range
      64916..125371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006772888.2 → XP_006772951.1  LOW QUALITY PROTEIN: whirlin

      UniProtKB/TrEMBL
      L5LBF3
      Conserved Domains (3) summary
      cd00992
      Location:85 → 162
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07357
      Location:366 → 446
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
      cl11968
      Location:1 → 59
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
    Nucleotide Protein
    Heading Accession and Version

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