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    POLR1E RNA polymerase I subunit E [ Pteropus alecto (black flying fox) ]

    Gene ID: 102894569, updated on 30-Mar-2024

    Summary

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    Gene symbol
    POLR1E
    Gene description
    RNA polymerase I subunit E
    Locus tag
    PAL_GLEAN10008051
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus alecto
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human mouse all
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    Genomic context

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    See POLR1E in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006435793.1 (4536110..4549008, complement)

    NW_006435793.1Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 5 Neighboring gene F-box protein 10 Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC112479451 Neighboring gene 5S ribosomal RNA Neighboring gene zinc finger and BTB domain containing 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006435793 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase I preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleolar large rRNA transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase I subunit RPA49
    Names
    polymerase (RNA) I polypeptide E, 53kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM32557v1 Primary Assembly

    Genomic

    1. NW_006435793.1 Reference ASM32557v1 Primary Assembly

      Range
      4536110..4549008 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025046543.1 → XP_024902311.1  DNA-directed RNA polymerase I subunit RPA49

      UniProtKB/TrEMBL
      L5KNV2
      Conserved Domains (1) summary
      pfam06870
      Location:36 → 402
      RNA_pol_I_A49; A49-like RNA polymerase I associated factor
    Nucleotide Protein
    Heading Accession and Version

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