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    ZBED1 zinc finger BED-type containing 1 [ Pteropus alecto (black flying fox) ]

    Gene ID: 102898595, updated on 30-Mar-2024

    Summary

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    Gene symbol
    ZBED1
    Gene description
    zinc finger BED-type containing 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus alecto
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human all
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    Genomic context

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    See ZBED1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006438979.1 (872846..877186)

    NW_006438979.1Genomic Context describing neighboring genes Neighboring gene glycogenin 2 Neighboring gene CD99 antigen Neighboring gene uncharacterized LOC102898849 Neighboring gene 5S ribosomal RNA Neighboring gene acetylserotonin O-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006438979 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger BED domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM32557v1 Primary Assembly

    Genomic

    1. NW_006438979.1 Reference ASM32557v1 Primary Assembly

      Range
      872846..877186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025049760.1 → XP_024905528.1  zinc finger BED domain-containing protein 1

      Conserved Domains (3) summary
      pfam02892
      Location:23 → 72
      zf-BED; BED zinc finger
      pfam05699
      Location:577 → 617
      Dimer_Tnp_hAT; hAT family C-terminal dimerisation region
      pfam14372
      Location:418 → 517
      DUF4413; Domain of unknown function (DUF4413)
    Nucleotide Protein
    Heading Accession and Version

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