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    TRIM66 tripartite motif containing 66 [ Chelonia mydas (Green sea turtle) ]

    Gene ID: 102946846, updated on 10-Mar-2024

    Summary

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    Gene symbol
    TRIM66
    Gene description
    tripartite motif containing 66
    Locus tag
    UY3_04506
    See related
    EnsemblRapid:ENSCMYG00015013248
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonia mydas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM66 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current rCheMyd1.pri.v2 (GCF_015237465.2) 6 NC_051246.2 (35744121..35827633, complement)
    102 previous assembly rCheMyd1.pri (GCF_015237465.1) 5 NC_051245.1 (35744281..35826548, complement)

    Chromosome 6 - NC_051246.2Genomic Context describing neighboring genes Neighboring gene LIM domain only 1 Neighboring gene serine/threonine kinase 33 Neighboring gene 60S ribosomal protein L27a Neighboring gene small nucleolar RNA SNORA3/SNORA45 family Neighboring gene small nucleolar RNA SNORA3/SNORA45 family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 66
    Names
    Tripartite motif-containing protein 66

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rCheMyd1.pri.v2 Primary Assembly

    Genomic

    1. NC_051246.2 Reference rCheMyd1.pri.v2 Primary Assembly

      Range
      35744121..35827633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043547953.1 → XP_043403888.1  tripartite motif-containing protein 66 isoform X2

      Conserved Domains (7) summary
      cd05502
      Location:1105 → 1213
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:212 → 337
      BBC; B-Box C-terminal domain
      PRK10263
      Location:456 → 553
      PRK10263; DNA translocase FtsK; Provisional
      cd15625
      Location:1030 → 1078
      PHD_TIF1delta; PHD finger found in transcriptional intermediary factor 1 delta (TIF1delta)
      cd16585
      Location:24 → 84
      RING-HC_TIF1_C-VI; RING finger, HC subclass, found in the transcriptional inknown asiary factor 1 (TIF1) family and similar proteins
      cd19811
      Location:108 → 144
      Bbox1_TRIM66; B-box-type 1 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      cl00034
      Location:162 → 213
      Bbox_SF; B-box-type zinc finger superfamily

    2. XM_037899765.2 → XP_037755693.1  tripartite motif-containing protein 66 isoform X1

      Related
      ENSCMYP00015020553.1, ENSCMYT00015024884.1
      Conserved Domains (7) summary
      cd05502
      Location:1106 → 1214
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:213 → 338
      BBC; B-Box C-terminal domain
      cd15625
      Location:1031 → 1079
      PHD_TIF1delta; PHD finger found in transcriptional intermediary factor 1 delta (TIF1delta)
      cd16585
      Location:25 → 85
      RING-HC_TIF1_C-VI; RING finger, HC subclass, found in the transcriptional inknown asiary factor 1 (TIF1) family and similar proteins
      cd19811
      Location:109 → 145
      Bbox1_TRIM66; B-box-type 1 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      pfam09770
      Location:399 → 570
      PAT1; Topoisomerase II-associated protein PAT1
      cl00034
      Location:163 → 214
      Bbox_SF; B-box-type zinc finger superfamily

    3. XM_043547954.1 → XP_043403889.1  tripartite motif-containing protein 66 isoform X3

      UniProtKB/TrEMBL
      M7CC54
      Conserved Domains (6) summary
      cd05502
      Location:1001 → 1109
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:108 → 233
      BBC; B-Box C-terminal domain
      cd15625
      Location:926 → 974
      PHD_TIF1delta; PHD finger found in transcriptional intermediary factor 1 delta (TIF1delta)
      cd19794
      Location:63 → 105
      Bbox2_TRIM66-like; B-box-type 2 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      cd19811
      Location:4 → 40
      Bbox1_TRIM66; B-box-type 1 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      pfam09770
      Location:294 → 465
      PAT1; Topoisomerase II-associated protein PAT1

    4. XM_043547955.1 → XP_043403890.1  tripartite motif-containing protein 66 isoform X3

      UniProtKB/TrEMBL
      M7CC54
      Conserved Domains (6) summary
      cd05502
      Location:1001 → 1109
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:108 → 233
      BBC; B-Box C-terminal domain
      cd15625
      Location:926 → 974
      PHD_TIF1delta; PHD finger found in transcriptional intermediary factor 1 delta (TIF1delta)
      cd19794
      Location:63 → 105
      Bbox2_TRIM66-like; B-box-type 2 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      cd19811
      Location:4 → 40
      Bbox1_TRIM66; B-box-type 1 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      pfam09770
      Location:294 → 465
      PAT1; Topoisomerase II-associated protein PAT1

    5. XM_037899768.2 → XP_037755696.1  tripartite motif-containing protein 66 isoform X3

      UniProtKB/TrEMBL
      M7CC54
      Conserved Domains (6) summary
      cd05502
      Location:1001 → 1109
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:108 → 233
      BBC; B-Box C-terminal domain
      cd15625
      Location:926 → 974
      PHD_TIF1delta; PHD finger found in transcriptional intermediary factor 1 delta (TIF1delta)
      cd19794
      Location:63 → 105
      Bbox2_TRIM66-like; B-box-type 2 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      cd19811
      Location:4 → 40
      Bbox1_TRIM66; B-box-type 1 zinc finger found in tripartite motif-containing protein 66 (TRIM66) and similar proteins
      pfam09770
      Location:294 → 465
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

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