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    TPBG trophoblast glycoprotein [ Chlorocebus sabaeus (green monkey) ]

    Gene ID: 103240000, updated on 11-Mar-2024

    Summary

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    Gene symbol
    TPBG
    Gene description
    trophoblast glycoprotein
    See related
    Ensembl:ENSCSAG00000000199
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chlorocebus sabaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
    Orthologs
    human mouse all
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    Genomic context

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    See TPBG in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666040.1 (183264600..183268868)
    100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 13 NC_023654.1 (7047658..7051390)

    NW_023666040.1Genomic Context describing neighboring genes Neighboring gene inhibitor of Bruton tyrosine kinase Neighboring gene U6 spliceosomal RNA Neighboring gene single-stranded DNA-binding protein 2-like Neighboring gene uncharacterized LOC119625366 Neighboring gene uncharacterized LOC119625367

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trophoblast glycoprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vero_WHO_p1.0

    Genomic

    1. NW_023666040.1 Reference Vero_WHO_p1.0

      Range
      183264600..183268868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008006441.2 → XP_008004632.1  trophoblast glycoprotein

      See identical proteins and their annotated locations for XP_008004632.1

      UniProtKB/TrEMBL
      A0A0D9SAA7
      Conserved Domains (4) summary
      smart00013
      Location:62 → 96
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:295 → 346
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:74 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:92 → 155
      LRR_8; Leucine rich repeat

    2. XM_038002198.1 → XP_037858126.1  trophoblast glycoprotein

      UniProtKB/TrEMBL
      A0A0D9SAA7
      Conserved Domains (4) summary
      smart00013
      Location:62 → 96
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:295 → 346
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:74 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:92 → 155
      LRR_8; Leucine rich repeat

    3. XM_008006442.2 → XP_008004633.1  trophoblast glycoprotein

      See identical proteins and their annotated locations for XP_008004633.1

      UniProtKB/TrEMBL
      A0A0D9SAA7
      Related
      ENSCSAP00000017796.1
      Conserved Domains (4) summary
      smart00013
      Location:62 → 96
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:295 → 346
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:74 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:92 → 155
      LRR_8; Leucine rich repeat

    4. XM_008006444.2 → XP_008004635.1  trophoblast glycoprotein

      See identical proteins and their annotated locations for XP_008004635.1

      UniProtKB/TrEMBL
      A0A0D9SAA7
      Conserved Domains (4) summary
      smart00013
      Location:62 → 96
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:295 → 346
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:74 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:92 → 155
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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