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    MKRN3 makorin ring finger protein 3 [ Carlito syrichta (Philippine tarsier) ]

    Gene ID: 103255306, updated on 19-Nov-2024

    Summary

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    Gene symbol
    MKRN3
    Gene description
    makorin ring finger protein 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carlito syrichta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
    Orthologs
    human mouse all
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    Genomic context

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    See MKRN3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007232113.1 (42285..44165)

    NW_007232113.1Genomic Context describing neighboring genes Neighboring gene MAGE family member L2 Neighboring gene necdin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007232113 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase makorin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Genomic

    1. NW_007232113.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

      Range
      42285..44165
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008053271.1 → XP_008051462.1  probable E3 ubiquitin-protein ligase makorin-3

      UniProtKB/TrEMBL
      A0A1U7TER7
      Conserved Domains (4) summary
      smart00356
      Location:95 → 121
      ZnF_C3H1; zinc finger
      PHA03096
      Location:252 → 401
      PHA03096; p28-like protein; Provisional
      cd00162
      Location:312 → 366
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam15815
      Location:441 → 507
      MKRN1_C; E3 ubiquitin-protein ligase makorin-1, C-terminal
    Nucleotide Protein
    Heading Accession and Version

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