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    LOC103535817 claudin-4-like [ Calypte anna (Anna's hummingbird) ]

    Gene ID: 103535817, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC103535817
    Gene description
    claudin-4-like
    See related
    EnsemblRapid:ENSCAAG00010011291
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calypte anna
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
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    Genomic context

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    See LOC103535817 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current bCalAnn1_v1.p (GCF_003957555.1) 19 NC_044264.1 (2653028..2660892, complement)
    100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007621750.1 (2350020..2350664, complement)

    Chromosome 19 - NC_044264.1Genomic Context describing neighboring genes Neighboring gene elastin Neighboring gene methyltransferase like 27 Neighboring gene claudin-3-like Neighboring gene claudin 4 Neighboring gene abhydrolase domain containing 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in bicellular tight junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    claudin-4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCalAnn1_v1.p

    Genomic

    1. NC_044264.1 Reference bCalAnn1_v1.p

      Range
      2653028..2660892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030462754.1 → XP_030318614.1  claudin-4-like isoform X2

      Related
      ENSCAAP00010015673.1, ENSCAAT00010016541.1
      Conserved Domains (1) summary
      cl21598
      Location:4 → 181
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

    2. XM_030462755.1 → XP_030318615.1  claudin-4-like isoform X2

      Conserved Domains (1) summary
      cl21598
      Location:4 → 181
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

    3. XM_030462753.1 → XP_030318613.1  claudin-4-like isoform X1

      Conserved Domains (1) summary
      cl21598
      Location:10 → 187
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
    Nucleotide Protein
    Heading Accession and Version

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