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    RAD54L RAD54 like [ Nipponia nippon (crested ibis) ]

    Gene ID: 104015539, updated on 3-Aug-2024

    Summary

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    Gene symbol
    RAD54L
    Gene description
    RAD54 like
    Locus tag
    Y956_13893
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nipponia nippon
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Threskiornithidae; Nipponia
    Orthologs
    human mouse all
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    Genomic context

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    See RAD54L in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009001455.1 (554089..577300, complement)

    NW_009001455.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 6, mitochondrial Neighboring gene leucine rich repeat containing 41 Neighboring gene uncharacterized LOC104015540 Neighboring gene leucine rich adaptor protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009001455.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA translocase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via synthesis-dependent strand annealing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair and recombination protein RAD54-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM70822v1 Primary Assembly

    Genomic

    1. NW_009001455.1 Reference ASM70822v1 Primary Assembly

      Range
      554089..577300 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009468310.1 → XP_009466585.1  DNA repair and recombination protein RAD54-like

      UniProtKB/TrEMBL
      A0A091VAA8
      Conserved Domains (4) summary
      cd00046
      Location:185 → 335
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00079
      Location:498 → 627
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00176
      Location:164 → 471
      SNF2_N; SNF2 family N-terminal domain
      pfam08658
      Location:82 → 131
      Rad54_N; Rad54 N terminal
    Nucleotide Protein
    Heading Accession and Version

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