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    IFIH1 interferon induced with helicase C domain 1 [ Apaloderma vittatum (bar-tailed trogon) ]

    Gene ID: 104270792, updated on 3-Aug-2024

    Summary

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    Gene symbol
    IFIH1
    Gene description
    interferon induced with helicase C domain 1
    Locus tag
    N311_09370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apaloderma vittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Trogoniformes; Trogonidae; Apaloderma
    Orthologs
    human mouse all
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    Genomic context

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    See IFIH1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current ASM70340v1 (GCF_000703405.1) Unplaced Scaffold NW_009705107.1 (7..29510)

    NW_009705107.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009705107.1 Unplaced Scaffold Reference ASM70340v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of interferon-beta production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to virus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon-induced helicase C domain-containing protein 1
    Names
    Interferon-induced helicase C domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apaloderma vittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM70340v1

    Genomic

    1. NW_009705107.1 Reference ASM70340v1

      Range
      7..29510
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009865257.1 → XP_009863559.1  interferon-induced helicase C domain-containing protein 1

      UniProtKB/TrEMBL
      A0A091N612
      Conserved Domains (6) summary
      COG1111
      Location:179 → 732
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd15807
      Location:755 → 871
      MDA5_C; C-terminal domain of Melanoma differentiation-associated protein 5, a cytoplasmic viral RNA receptor
      cd12090
      Location:418 → 550
      MDA5_ID; Insert domain of MDA5
      pfam00271
      Location:561 → 678
      Helicase_C; Helicase conserved C-terminal domain
      pfam04851
      Location:176 → 361
      ResIII; Type III restriction enzyme, res subunit
      cl14633
      Location:1 → 74
      DD; Death Domain Superfamily of protein-protein interaction domains
    Nucleotide Protein
    Heading Accession and Version

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