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    LOC104502119 hepatocyte nuclear factor 4-beta-like [ Buceros rhinoceros silvestris ]

    Gene ID: 104502119, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC104502119
    Gene description
    hepatocyte nuclear factor 4-beta-like
    Locus tag
    N320_06789
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Buceros rhinoceros silvestris (sub-species: silvestris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Bucerotiformes; Bucerotidae; Buceros
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    Genomic context

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    See LOC104502119 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM71030v1 (GCF_000710305.1) Unplaced Scaffold NW_010396972.1 (68929..91859)

    NW_010396972.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010396972.1 Unplaced Scaffold Reference ASM71030v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 4-beta-like
    Names
    Hepatocyte nuclear factor 4-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Buceros rhinoceros silvestris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM71030v1

    Genomic

    1. NW_010396972.1 Reference ASM71030v1

      Range
      68929..91859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010146045.1 → XP_010144347.1  hepatocyte nuclear factor 4-beta-like isoform X1

      UniProtKB/TrEMBL
      A0A091GSW5
      Conserved Domains (2) summary
      cd06931
      Location:161 → 382
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:70 → 145
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    2. XM_010146046.1 → XP_010144348.1  hepatocyte nuclear factor 4-beta-like isoform X2

      UniProtKB/TrEMBL
      A0A091GSW5
      Conserved Domains (2) summary
      cd06931
      Location:150 → 371
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:59 → 134
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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