U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC104587395 probable E3 ubiquitin-protein ligase ARI1 [ Nelumbo nucifera (sacred lotus) ]

    Gene ID: 104587395, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC104587395
    Gene description
    probable E3 ubiquitin-protein ligase ARI1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nelumbo nucifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC104587395 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729251.1 (292981..312894)

    NW_010729251.1Genomic Context describing neighboring genes Neighboring gene endothelin-converting enzyme 2 Neighboring gene 30S ribosomal protein S9, chloroplastic-like Neighboring gene histone-lysine N-methyltransferase SUVR5 Neighboring gene RNA-directed DNA polymerase homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_010729251.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable E3 ubiquitin-protein ligase ARI1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Chinese Lotus 1.1 Primary Assembly

    Genomic

    1. NW_010729251.1 Reference Chinese Lotus 1.1 Primary Assembly

      Range
      292981..312894
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010244993.2 → XP_010243295.1  probable E3 ubiquitin-protein ligase ARI1 isoform X1

      UniProtKB/TrEMBL
      A0A1U7YSR3, A0A822XN15
      Conserved Domains (3) summary
      smart00647
      Location:154 → 216
      IBR; In Between Ring fingers
      pfam01485
      Location:242 → 273
      IBR; IBR domain, a half RING-finger domain
      pfam13923
      Location:83 → 119
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

    2. XM_010244995.2 → XP_010243297.1  probable E3 ubiquitin-protein ligase ARI1 isoform X2

      See identical proteins and their annotated locations for XP_010243297.1

      UniProtKB/TrEMBL
      A0A1U7YVG7, A0A822XN15
      Conserved Domains (3) summary
      smart00647
      Location:131 → 193
      IBR; In Between Ring fingers
      pfam01485
      Location:219 → 250
      IBR; IBR domain, a half RING-finger domain
      pfam13923
      Location:60 → 96
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

    3. XM_010244994.2 → XP_010243296.1  probable E3 ubiquitin-protein ligase ARI1 isoform X2

      See identical proteins and their annotated locations for XP_010243296.1

      UniProtKB/TrEMBL
      A0A1U7YVG7, A0A822XN15
      Conserved Domains (3) summary
      smart00647
      Location:131 → 193
      IBR; In Between Ring fingers
      pfam01485
      Location:219 → 250
      IBR; IBR domain, a half RING-finger domain
      pfam13923
      Location:60 → 96
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

    RNA

    1. XR_002022106.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases