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    LOC104710215 mediator of RNA polymerase II transcription subunit 8 [ Camelina sativa (false flax) ]

    Gene ID: 104710215, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC104710215
    Gene description
    mediator of RNA polymerase II transcription subunit 8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camelina sativa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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    Genomic context

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    See LOC104710215 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current Cs (GCF_000633955.1) 9 NC_025693.1 (1912621..1917633)

    Chromosome 9 - NC_025693.1Genomic Context describing neighboring genes Neighboring gene transcription termination factor MTEF1, chloroplastic-like Neighboring gene agamous-like MADS-box protein AGL30 Neighboring gene expansin-A15 Neighboring gene uncharacterized LOC104710217

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_025693.1 Chromosome 9 Reference Cs

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cs

    Genomic

    1. NC_025693.1 Reference Cs

      Range
      1912621..1917633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010426785.2 → XP_010425087.1  mediator of RNA polymerase II transcription subunit 8 isoform X1

      See identical proteins and their annotated locations for XP_010425087.1

      Conserved Domains (1) summary
      pfam05110
      Location:349 → 452
      AF-4; AF-4 proto-oncoprotein

    2. XM_010426784.2 → XP_010425086.1  mediator of RNA polymerase II transcription subunit 8 isoform X1

      See identical proteins and their annotated locations for XP_010425086.1

      Conserved Domains (1) summary
      pfam05110
      Location:349 → 452
      AF-4; AF-4 proto-oncoprotein

    3. XM_010426788.2 → XP_010425090.1  mediator of RNA polymerase II transcription subunit 8 isoform X2

      Conserved Domains (1) summary
      pfam05110
      Location:345 → 450
      AF-4; AF-4 proto-oncoprotein

    4. XM_010426786.2 → XP_010425088.1  mediator of RNA polymerase II transcription subunit 8 isoform X1

      See identical proteins and their annotated locations for XP_010425088.1

      Conserved Domains (1) summary
      pfam05110
      Location:349 → 452
      AF-4; AF-4 proto-oncoprotein

    5. XM_019230460.1 → XP_019086005.1  mediator of RNA polymerase II transcription subunit 8 isoform X4

      Conserved Domains (1) summary
      pfam05110
      Location:254 → 339
      AF-4; AF-4 proto-oncoprotein

    6. XM_019230459.1 → XP_019086004.1  mediator of RNA polymerase II transcription subunit 8 isoform X3

      Conserved Domains (1) summary
      pfam05110
      Location:254 → 339
      AF-4; AF-4 proto-oncoprotein
    Nucleotide Protein
    Heading Accession and Version

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